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Diversity, SNP, and Trait Data at MaizeGDB

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SNPversity allows you to compare SNPs across a diverse selection of inbred lines.
Search genotype data at Panzea.
Search GBS data at Panzea.
TYPSimSelector: Sort lines from the Ames Diversity Panel based on IBS (Identity by State) score.

Types of variation data

  • Single Nucleotide Polymorphisms (SNPs), including insertions and deletions.
  • Copy Number Variations (CNVs).
  • Presence/Absence Variations (PAVs).
  • Complex alleles. (also called "alternative loci")
  • Sequences which do not align to the reference genome.
  • Inversion break points.
  • Phenotypes.
  • Germplasm via GRIN.
  • Transcript assemblies and exome contigs alignments.
  • Transcript assemblies and exome contigs sequences at GenBank.
  • Expression data at GEO, SRA, and other repositories.
  • Genetic maps.

Information for contributers

If you wish to submit diversity, SNP, or trait data to MaizeGDB, contact us.

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