MaizeGDB is a community-oriented, long-term, federally funded
informatics service to researchers focused on the crop plant and
model organism Zea mays.
MaizeGDB is a founding member of
AgBioData,
a consortuim of agriculture-related online resources which is
committed to making agriculture-related research data FAIR.
GCV: A web-app that visualizes genomic context data in a single, federated interface by using functional annotations as a unit of search and comparison.
Sequencing technologies: PacBio RSII Sequencing method: SMRT (Single Molecule Real-Time) Genome coverage: 60 x
Assembly description
Assembly methods: CANU Construction of pseudomolecules: Yes
Assembly statistics
Scaff num
2,381
N50 scaff length
228,884,060 bp
N50 scaff count
5
N50 contig length
1,487,454 bp
N50 contig count
418
Total number of scaffolds in assembly.
The length of scaffold which takes the sum length (summing from longest to shortest scaffold) past 50% of the total assembly size.
How many scaffolds are counted in reaching the N50 threshold.
The length of contig which takes the sum length (summing from longest to shortest contig) past 50% of the total assembly size.
How many contig are counted in reaching the N50 threshold.
A contig is a contiguous consensus sequence that is
derived from a collection of overlapping reads.
A scaffold is set of a ordered and orientated contigs
that are linked to one another by mate pairs of sequencing reads.
Annotation
Annotation Identifier
Zm00067a.1
Annotation Date
2022
Is current
yes
Metadata
Browser
Genome browser is not available for assembly Zm-CIMBL55-CAU-1.0
