MaizeGDB is a community-oriented, long-term, federally funded
informatics service to researchers focused on the crop plant and
model organism Zea mays.
MaizeGDB is a founding member of
AgBioData,
a consortuim of agriculture-related online resources which is
committed to making agriculture-related research data FAIR.
GCV: A web-app that visualizes genomic context data in a single, federated interface by using functional annotations as a unit of search and comparison.
High-resolution genetic mapping of maize pan-genome sequence anchors.
Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES
At MaizeGDB DOI
Sequence service provider: Library Prep by University of Illinois / Sequenced by Cornell University Sequencing technologies: Illumina HiSeq2500, Illumina MiSeq Sequencing method: Illumina HiSeq2500, Illumina MiSeq Genome coverage: 130x
Assembly description
Assembly methods: DenovoMAGIC Construction of pseudomolecules: Scaffolds were ordered and oriented Scaffolds were aligned using the assembly Zm-B73-REFERENCE-GRAMENE-4.0.
The length of contig which takes the sum length (summing from longest to shortest contig) past 50% of the total assembly size.
How many contig are counted in reaching the N50 threshold.
A contig is a contiguous consensus sequence that is
derived from a collection of overlapping reads.
A scaffold is set of a ordered and orientated contigs
that are linked to one another by mate pairs of sequencing reads.
Annotation
Annotation Identifier
Zm00006a.1
Annotation Provider
Yingping Jiao, Ware lab at CSHL
Annotation Date
October, 2016
Is current
yes
Metadata
Browser
Genome browser is not available for assembly Zm-CML247-REFERENCE-PANZEA-1.1
